Home Fundamentals Research Data Management FAIR Data Principles Metadata Ontologies Data Sharing Data Publications Data Management Plan Version Control & Git Public Data Repositories Persistent Identifiers Electronic Lab Notebooks (ELN) DataPLANT Implementations Annotated Research Context ARC specification ARC Commander Swate MetadataQuiz DataHUB DataPLAN Ontology Service Landscape ARC Commander Manual Setup Git Installation ARC Commander Installation Windows MacOS Linux ARC Commander DataHUB Access Before we start Central Functions Initialize Clone Connect Synchronize Configure Branch ISA Metadata Functions ISA Metadata Investigation Study Assay Update Export ARCitect Manual Installation - Windows Installation - macOS Installation - Linux QuickStart QuickStart - Videos ARCmanager Manual What is the ARCmanager? Connect to your DataHUB View your ARCs Create new ARCs Add new studies and assays Upload files Add metadata to your ARCs Swate Manual QuickStart QuickStart - Videos Annotation tables Building blocks Building Block Types Adding a Building Block Filling cells with ontology terms Advanced Term Search File Picker Templates Contribute Templates ISA-JSON DataHUB Manual Overview User Settings Generate a Personal Access Token (PAT) Projects Panel ARC Panel Forks Working with files ARC Settings ARC Wiki Groups Panel Create a new user group CQC Pipelines & validation Find and use ARC validation packages Data publications Passing Continuous Quality Control Submitting ARCs with ARChigator Track publication status Use your DOIs Guides ARC User Journey Create your ARC ARCitect QuickStart ARCitect QuickStart - Videos ARC Commander QuickStart ARC Commander QuickStart (Experts) Annotate Data in your ARC Annotation Principles ISA File Types Best Practices For Data Annotation Swate QuickStart Swate QuickStart - Videos Swate Walk-through Share your ARC Register at the DataHUB DataPLANT account Invite collaborators to your ARC Sharing ARCs via the DataHUB Work with your ARC Using ARCs with Galaxy Computational Workflows CWL Introduction CWL runner installation CWL Examples CWL Metadata Recommended ARC practices Syncing recommendation Keep files from syncing to the DataHUB Managing ARCs across locations Working with large data files Adding external data to the ARC ARCs in Enabling Platforms Publication to ARC Troubleshooting Git Troubleshooting & Tips Contribute Swate Templates Knowledge Base Teaching Materials Events 2023 Nov: CEPLAS PhD Module Oct: CSCS CEPLAS Start Your ARC Sept: MibiNet CEPLAS Start Your ARC July: RPTU Summer School on RDM July: Data Steward Circle May: CEPLAS Start Your ARC Series Start Your ARC Series - Videos Events 2024 TRR175 Becoming FAIR CEPLAS ARC Trainings – Spring 2024 MibiNet CEPLAS DataPLANT Tool-Workshops TRR175 Tutzing Retreat Frequently Asked Questions

Connect to your DataHUB

last updated at 2024-06-13

To be able to use the ARCmanager, you need to have registered to one of the DataHUBs. Information on the different DataHUBs can be found here.

Clicking on the the DataHUB button (Fig. 1) brings you to the drop down menu of available DataHUBs. The currently selected DataHUB is shaded in grey (Fig. 2).


Fig. 1 Open the drop-down menu to select a DataHUB.

Fig. 2 List of available DataHUBs.


At present, there are three different DataHUBs available for managing research data. The DataHUBs "reference" and "federated" are available to all researchers, whereas the TRR356 PlantMicrobe DataHUB is only available for members of this project. Members of the TRR356 project are advised to use this DataHUB.

After selecting a DataHUB that you want to access, click on the Login button to begin the login process:


Fig. 3 Start login process for the selected DataHUB.


If you are using the ARCmanager for the first time, you will see a window (Fig. 4) asking you to authorize the ARCmanager application to authenticate you and edit files of your projects on your behalf. Use the Authorize button to proceed.


Fig. 4 Authorization screen for ARCmanager to use a DataHUB user account.


For the login process, you are presented with a selection of authentication options. Select one that you have used before in the registration process and enter your credentials (Fig. 5).

Different authentication options can be used for the same DataHUB user, if the logins of the different providers have been merged. This process is mediated by Life Science RI. If you are not presented with the option to merge your identities during the registration of an additional identity via another provider, you will have to get in touch with support@aai.lifescience-ri.eu for merging the identities. "Unmerged" identities will be treated as two different users in the DataHUB. Having different users complicates working with GitLab projects locally on your computer and is not recommended.


Fig. 5 Login options.


After successful login, you see the former lilac Login button change to a pink Logout button (Fig. 6).


Fig. 6 Welcome screen after login. The presence of the pink Logout button is a useful indicator for showing that you are logged in.


Accessing the ISA metadata search

Without logging in to any DataHUB, the ARC search button (Fig. 1) provides a list of published ARCs that can be searched using the ISA metadata search via the ARC Metadata Registry.


Fig. 7 Searching for published ARCs.


DataPLANT Support

Besides these technical solutions, DataPLANT supports you with community-engaged data stewardship. For further assistance, feel free to reach out via our helpdesk or by contacting us directly .
Contribution Guide 📖
✏️ Edit this page