Please install version v0.0.31 (or later) of the ARCitect: https://github.com/nfdi4plants/ARCitect/releases/latest
https://nfdi4plant.sharepoint.com/:f:/s/Teaching/Eik7k-oJiMREgZ24kto7sIYBGxHmmZlS_Kzf7psk-5w-xg?e=u0sADd
git.nfdi4plants.org
By default, your ARC's name will be used
https://gitlab.nfdi4plants.de/<YourUserName>/<YourARC>
Make sure that no ARC exists at https://gitlab.nfdi4plants.de/<YourUserName>/<YourARC>. Otherwise you will sync to that ARC.
by clicking "Add Study" and entering an identifier for your study
Use talinum_drought as an identifier
In the study panel you can add
by clicking "Add Assay" and entering an identifier for your assay
Add two assays with rnaseq and metabolomics as an identifier
You can either
Link your assays to your talinum_drought study
In the assay panel you can define the assay's
In the file tree you can
Import Dataset allows to import data from any location on your computer into the ARC.
Depending on the file size, this may take a while. Test this with a small batch of files first.
protocols and multiple datasets can directly be imported via ARCitect
The Explorer (6) button directly opens your ARC locally
You have to commit changes before you can upload to the DataHUB
If you are logged in, the Commit panel shows
It allows you to
From the sidebar, navigate to DataHUB Sync (8)
The DataHUB Sync panel allows you to
Initiated an ARC Structured and ... ... annotated experimental data Shared with collaborators
Don't worry
a "continuous quality control" (CQC) pipeline validates your ARC
This fails if one of the following metadata items is missing:
Investigation Identifier Investigation Title Investigation Description Investigation Person Last Name Investigation Person First Name Investigation Person Email Investigation Person Affiliation
If the pipeline has failed once, it is disabled by default
To reactivate it and let the DataHUB validate your ARC again:
<arc-url>/-/settings/ci_cd
TODO - more to remote? - add history panel - add Swate alpha examples in ARCitect ??? - check linking studies and assays
TODO show connected assays
TODO more to remote?